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Publications
Recent Publications
2024
- Liu, Hanwei;Chittur, Priya K. et al. (2024) Cohesive Living Bacterial Films with Tunable Mechanical Properties from Cell Surface Protein Display
- Qian, Chenxi;Liu, Hanwei et al. (2024) Quantitative Real-Time Analysis of Living Materials by Stimulated Raman Scattering Microscopy
2023
- Breunig, Stephanie L.;Quijano, Janine C. et al. (2023) Incorporation of Aliphatic Proline Residues into Recombinantly Produced InsulinPMCID PMC10728891
- Kozlowski, Mark T.;Zook, Heather N. et al. (2023) A matrigel-free method for culture of pancreatic endocrine-like cells in defined protein-based hydrogelsPMCID PMC10033864
2022
- Sim, Seunghyun;Hui, Yue et al. (2022) 3D-Printable Cellular Composites for the Production of Recombinant Proteins
2021
- Breunig, Stephanie;Chapman, Alex et al. (2021) Modification of Insulin Lispro by Incorporation of Non-canonical Proline Residues
- Kozlowski, Mark T.;Silverman, Bradley R. et al. (2021) Genetically Programmable Microbial AssemblyPMCID PMC8978479
2020
- Metskas, Lauren Ann;Ho, Samuel et al. (2020) The Effect of Cryo Temperature on Commonly used Fluorophores
2019
- Ho, Samuel H.;Tirrell, David A. (2019) Enzymatic Labeling of Bacterial Proteins for Super-resolution Imaging in Live CellsPMCID PMC6935894
- Bergkessel, Megan;Babin, Brett M. et al. (2019) The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosaPMCID PMC6736744
- Fang, Katharine Y.;Lieblich, Seth A. et al. (2019) Replacement of ProB28 by pipecolic acid protects insulin against fibrillation and slows hexamer dissociation
2018
- Rapp, Peter B.;Omar, Ahmad K. et al. (2018) Mechanisms of diffusion in associative polymer networks: evidence for chain hoppingPMCID PMC8997312
- Ghazalli, Nadiah;Wu, Xiaoxing et al. (2018) Glucocorticoid signaling enhances expression of glucose-sensing molecules in immature pancreatic beta-like cells derived from murine embryonic stem cells in vitroPMCID PMC6029647
2017
- Dooling, L. J.;Tirrell, D. A. (2017) Programmable viscoelastic matrices from artificial proteins
- Alvarez-Castelao, Beatriz;Schanzenbächer, Christoph T. et al. (2017) Cell-type-specific metabolic labeling of nascent proteomes in vivo
- Babin, Brett M.;Atangcho, Lydia et al. (2017) Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in Pseudomonas aeruginosa BiofilmsPMCID PMC5654934
- Obana, Maiko;Silverman, Bradley R. et al. (2017) Protein-Mediated Colloidal AssemblyPMCID PMC5672941
- Bergkessel, M.;Newman, D. K. et al. (2017) SutA is a Global Transcriptional Regulator Operating during Slow Growth in Pseudomonas Aeruginosa
- Lieblich, Seth A.;Fang, Katharine Y. et al. (2017) 4S-Hydroxylation of insulin at ProB28 accelerates hexamer dissociation and delays fibrillationPMCID PMC5812673
- Burke, Kelly S.;Antilla, Katie A. et al. (2017) A Fluorescence in Situ Hybridization Method To Quantify mRNA Translation by Visualizing Ribosome–mRNA Interactions in Single CellsPMCID PMC5445550
- Rapp, Peter B.;Omar, Ahmad K. et al. (2017) Analysis and control of chain mobility in protein hydrogels
- Glenn, Weslee S.;Stone, Shannon E. et al. (2017) Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT) Enables Time-Resolved Analysis of Protein Synthesis in Native Plant TissuePMCID PMC5338676
- Glenn, Weslee S.;Stone, Shannon E. et al. (2017) BONCAT enables time-resolved analysis of protein synthesis in native plant tissue
- Stone, Shannon E.;Glenn, Weslee S. et al. (2017) Cell-selective proteomics for biological discoveryPMCID PMC5337159
2016
- Dooling, Lawrence J.;Tirrell, David A. (2016) Engineering the Dynamic Properties of Protein Networks through Sequence VariationPMCID PMC5126713
- Ho, Samuel H.;Tirrell, David A. (2016) Chemoenzymatic Labeling of Proteins for Imaging in Bacterial Cells
- Dooling, Lawrence J.;Buck, Maren E. et al. (2016) Programming Molecular Association and Viscoelastic Behavior in Protein Networks
- Tremblay, Jacob R.;LeBon, Jeanne M. et al. (2016) In Vitro Colony Assays for Characterizing Tri-potent Progenitor Cells Isolated from the Adult Murine PancreasPMCID PMC4927776
- Mahdavi, Alborz;Hamblin, Graham D. et al. (2016) Engineered Aminoacyl-tRNA Synthetase for Cell-Selective Analysis of Mammalian Protein SynthesisPMCID PMC4825725
- Bagert, John D.;van Kessel, Julia C. et al. (2016) Time-resolved proteomic analysis of quorum sensing in Vibrio harveyiPMCID PMC4763989
- Babin, Brett M.;Bergkessel, Megan et al. (2016) SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosaPMCID PMC4747698
- Bertozzi, Carolyn R.;Chang, Christopher J. et al. (2016) Grand Challenges in Chemistry for 2016 and BeyondPMCID PMC4827666
- Jin, Liang;Gao, Dan et al. (2016) Cells with surface expression of CD133^(high)CD71^(low) are enriched for tripotent colony-forming progenitor cells in the adult murine pancreasPMCID PMC4762724
2015
- Zehner, Nicholas A.;Dietrick, Scott M. et al. (2015) Two-Site Internally Cooperative Mechanism for Enzyme Kinetics in a Hydrogel Forming Recombinant Protein
- Notbohm, Jacob;Lesman, Ayelet et al. (2015) Quantifying cell-induced matrix deformation in three dimensions based on imaging matrix fibers
- Kulkarni, Chethana;Lo, Megan et al. (2015) Bioorthogonal Chemoenzymatic Functionalization of Calmodulin for Bioconjugation Applications
- Ghazalli, Nadiah;Mahdavi, Alborz et al. (2015) Postnatal Pancreas of Mice Contains Tripotent Progenitors Capable of Giving Rise to Duct, Acinar, and Endocrine Cells In VitroPMCID PMC4545527
- Notbohm, Jacob;Lesman, Ayelet et al. (2015) Microbuckling of fibrin provides a mechanism for cell mechanosensingPMCID PMC4528600
- DeForest, Cole A.;Tirrell, David A. (2015) A photoreversible protein-patterning approach for guiding stem cell fate in three-dimensional gels
- tom Dieck, Susanne;Kochen, Lisa et al. (2015) Direct visualization of newly synthesized target proteins in situPMCID PMC4414919
- Yuet, Kai P.;Doma, Meenakshi K. et al. (2015) Cell-Specific Proteomic Analysis in Caenorhabditis elegansPMCID PMC4352802
- Wang, Pin;Vaidehi, Nagarajan et al. (2015) Virtual Screening for Binding of Phenylalanine Analogues to Phenylalanyl-tRNA Synthetase
- Feng, Lihui;Rutherford, Steven T. et al. (2015) A Qrr Noncoding RNA Deploys Four Different Regulatory Mechanisms to Optimize Quorum-Sensing DynamicsPMCID PMC4313533
2014
- Van Deventer, James A.;Yuet, Kai P. et al. (2014) Cell Surface Display Yields Evolvable, Clickable Antibody FragmentsPMCID PMC4199383
- Sun, Fei;Zhang, Wen-Bin et al. (2014) Synthesis of bioactive protein hydrogels by genetically encoded SpyTag-SpyCatcher chemistryPMCID PMC4128157
- Hatzenpichler, Roland;Scheller, Silvan et al. (2014) In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistryPMCID PMC4122687
- Bagert, John D.;Xie, Yushu J. et al. (2014) Quantitative, Time-Resolved Proteomic Analysis by Combining Bioorthogonal Noncanonical Amino Acid Tagging and Pulsed Stable Isotope Labeling by Amino Acids in Cell CulturePMCID PMC4014290
- Lesman, Ayelet;Notbohm, Jacob et al. (2014) Contractile forces regulate cell division in three-dimensional environmentsPMCID PMC4003238
- Burts, Alan O.;Liao, Longyan et al. (2014) Brush-first and Click: Efficient Synthesis of Nanoparticles that Degrade and Release Doxorubicin in Response to Light
- Yuet, Kai P.;Tirrell, David A. (2014) Chemical Tools for Temporally and Spatially Resolved Mass Spectrometry-Based ProteomicsPMCID PMC3925203
- Lu, Ying Y.;Sweredoski, Michael J. et al. (2014) Prometastatic GPCR CD97 Is a Direct Target of Tumor Suppressor microRNA-126PMCID PMC3944050
- Mahdavi, Alborz;Szychowski, Janek et al. (2014) Identification of secreted bacterial proteins by noncanonical amino acid taggingPMCID PMC3890788
- Jin, Liang;Feng, Tao et al. (2014) Colony-Forming Progenitor Cells in the Postnatal Mouse Liver and Pancreas Give Rise to Morphologically Distinct Insulin-Expressing Colonies in 3D CulturesPMCID PMC4295799
2013
- Kulkarni, Chethana;Kinzer-Ursem, Tamara L. et al. (2013) Selective Functionalization of the Protein N Terminus with N-Myristoyl Transferase for Bioconjugation in Cell Lysate
- Zhang, Wen-Bin;Sun, Fei et al. (2013) Controlling Macromolecular Topology with Genetically Encoded SpyTag-SpyCatcher Chemistry
- Tzlil, Shelly;Tirrell, David A. (2013) Strain propagation in artificial extracellular matrix proteins can accelerate cell spreading and polarization
- Le, Duc H. T.;Hanamura, Ryo et al. (2013) Self-Assembly of Elastin–Mimetic Double Hydrophobic Polypeptides
- Ngo, John T.;Schuman, Erin M. et al. (2013) Mutant methionyl-tRNA synthetase from bacteria enables site-selective N-terminal labeling of proteins expressed in mammalian cellsPMCID PMC3612679
- Jin, Liang;Feng, Tao et al. (2013) Colony-forming cells in the adult mouse pancreas are expandable in Matrigel and form endocrine/acinar colonies in laminin hydrogelPMCID PMC3593860
- Mahdavi, Alborz;Segall-Shapiro, Thomas H. et al. (2013) A Genetically Encoded AND Gate for Cell-Targeted Metabolic Labeling of ProteinsPMCID PMC3620012
2012
- Wang, Hua;Mahdavi, Alborz et al. (2012) A magnetic cell-based sensor
- Lu, Ying Y.;Tirrell, David (2012) Identifying Protein Targets of a Tumor Suppressor MicroRNA in Human Metastatic Breast Cancer Cells
- Hodas, Jennifer J. L.;Nehring, Anne et al. (2012) Dopaminergic modulation of the hippocampal neuropil proteome identified by bioorthogonal noncanonical amino acid tagging (BONCAT)PMCID PMC3752339
- Yuet, Kai;Doma, Meenakshi et al. (2012) Cell type-specific proteomic profiling in Caenorhabditis elegans
- Ngo, John T.;Babin, Brett M. et al. (2012) State-Selective Metabolic Labeling of Cellular ProteinsPMCID PMC3423470
- Bagert, John;Tirrell, David (2012) A Quantitative Proteomics Approach to the Identification of Protein Targets of Small Bacterial RNAs
- Patel, Paresma R.;Kiser, Rosemary Conrad et al. (2012) Synthesis and Cell Adhesive Properties of Linear and Cyclic RGD Functionalized Polynorbornene Thin FilmsPMCID PMC3442365
- Mahdavi, Alborz;Mazmanian, Sarkis et al. (2012) Identifying Secreted Proteins by Non-canonical Amino Acid Tagging
- Meijer, E. W.;Tirrell, D. A. et al. (2012) SPSJ International Award for E. W. Meijer, André Persoons, and David A. Tirrell
- Truong, Frank;Yoo, Tae Hyeon et al. (2012) Two-Strain, Cell-Selective Protein Labeling in Mixed Bacterial CulturesPMCID PMC3443257
- Hinz, Flora I.;Dieterich, Daniela C. et al. (2012) Noncanonical Amino Acid Labeling in Vivo to Visualize and Affinity Purify Newly Synthesized Proteins in Larval ZebrafishPMCID PMC3278164
2011
- Xia, Yan;Li, Yongjun et al. (2011) EPR Study of Spin Labeled Brush Polymers in Organic Solvents
- Ngo, John T.;Tirrell, David A. (2011) Noncanonical Amino Acids in the Interrogation of Cellular Protein SynthesisPMCID PMC3178009
- Beatty, Kimberly E.;Szychowski, Janek et al. (2011) A BODIPY-Cyclooctyne for Protein Imaging in Live CellsPMCID PMC3387918
- Notbohm, J.;Kim, J.-H. et al. (2011) Three-dimensional traction force microscopy for studying cellular interactions with biomaterials
- Franck, Christian;Maskarinec, Stacey A. et al. (2011) Three-Dimensional Traction Force Microscopy: A New Tool for Quantifying Cell-Matrix InteractionsPMCID PMC3066163
- Van Deventer, James A.;Fisk, John D. et al. (2011) Homoisoleucine: A Translationally Active Leucine Surrogate of Expanded Hydrophobic Surface AreaPMCID PMC3149977
- Reichert, William "Monty";Ratner, Buddy D. et al. (2011) 2010 Panel on the Biomaterials Grand Challenges
- Johnson, Jeremiah A.;Lu, Ying Y. et al. (2011) Core-Clickable PEG-Branch-Azide Bivalent-Bottle-Brush Polymers by ROMP: Grafting-Through and Clicking-ToPMCID PMC3077470
2010
- Szychowski, Janek;Mahdavi, Alborz et al. (2010) Cleavable Biotin Probes for Labeling of Biomolecules via Azide−Alkyne CycloadditionPMCID PMC3016050
- Johnson, Jeremiah A.;Lu, Ying Y. et al. (2010) Drug-Loaded, Bivalent-Bottle-Brush Polymers by Graft-through ROMPPMCID PMC3083120
- Fong, Eileen;Tirrell, David A. (2010) Collective Cell Migration on Artificial Extracellular Matrix Proteins Containing Full-Length Fibronectin DomainsPMCID PMC3027490
- Johnson, Jeremiah A.;Lu, Ying Y. et al. (2010) Residue-specific incorporation of non-canonical amino acids into proteins: recent developments and applicationsPMCID PMC3008400
- Fong, Eileen;Tzlil, Shelly et al. (2010) Boundary crossing in epithelial wound healingPMCID PMC2984212
- Olsen, Bradley D.;Kornfield, Julia A. et al. (2010) Yielding Behavior in Injectable Hydrogels from Telechelic ProteinsPMCID PMC3017468
- Beatty, Kimberly E.;Fisk, John D. et al. (2010) Live-Cell Imaging of Cellular Proteins by a Strain-Promoted Azide–Alkyne CycloadditionPMCID PMC3069858
- Kwon, Oh-Hoon;Yoo, Tae Hyeon et al. (2010) Hydration dynamics at fluorinated protein surfacesPMCID PMC2951393
- Dieterich, Daniela C.;Hodas, Jennifer J. L. et al. (2010) In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neuronsPMCID PMC2920597
2009
- Maskarinec, Stacey A.;Franck, Christian et al. (2009) Quantifying cellular traction forces in three dimensionsPMCID PMC2799761
- Schmitt, Emmanuelle;Tanrikulu, I. Caglar et al. (2009) Switching from an Induced-Fit to a Lock-and-Key Mechanism in an Aminoacyl-tRNA Synthetase with Modified SpecificityPMCID PMC2801061
- Zhang, Kechun;Sugawara, Ayae et al. (2009) Generation of Surface-Bound Multicomponent Protein GradientsPMCID PMC3517104
- Ngo, John T.;Champion, Julie A. et al. (2009) Cell-selective metabolic labeling of proteinsPMCID PMC3176724
- Tanrikulu, I. Caglar;Schmitt, Emmanuelle et al. (2009) Discovery of Escherichia coli methionyl-tRNA synthetase mutants for efficient labeling of proteins with azidonorleucine in vivoPMCID PMC2741243
- Tang, Yi;Wang, Pin et al. (2009) Introduction of an Aliphatic Ketone into Recombinant Proteins in a Bacterial Strain that Overexpresses an Editing-Impaired Leucyl-tRNA SynthetasePMCID PMC3184883
- Montclare, Jin Kim;Son, Soojin et al. (2009) Biosynthesis and Stability of Coiled-Coil Peptides Containing (2S,4R)-5,5,5-Trifluoroleucine and (2S,4S)-5,5,5-TrifluoroleucinePMCID PMC3212351
2008
- Beatty, Kimberly E.;Tirrell, David A. (2008) Two-color labeling of temporally defined protein populations in mammalian cellsPMCID PMC3182832
- Liu, Julie C.;Tirrell, David A. (2008) Cell response to RGD density in cross-linked artificial extracellular matrix protein filmsPMCID PMC2703290
- Strable, Erica;Prasuhn, Duane E. et al. (2008) Unnatural Amino Acid Incorporation into Virus-Like ParticlesPMCID PMC2713011
- Nowatzki, Paul J.;Franck, Christian et al. (2008) Mechanically Tunable Thin Films of Photosensitive Artificial Proteins: Preparation and Characterization by Nanoindentation
- Connor, Rebecca E.;Piatkov, Konstantin et al. (2008) Enzymatic N-terminal Addition of Noncanonical Amino Acids to Peptides and Proteins